{"acc":"A0A8B1JFP8","gene":"ORF1ab","length":4375,"organism":"Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)","ncbi_taxon_id":2697049,"taxonomy":["Viruses","Riboviria","Orthornavirae","Pisuviricota","Pisoniviricetes","Nidovirales","Cornidovirineae","Coronaviridae","Orthocoronavirinae","Betacoronavirus","Sarbecovirus","Severe acute respiratory syndrome coronavirus"],"sequence":"MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDIFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYIXXXXXXXXXXXXXXXXXTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKXXXXXXXXXXXXXXXXEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQXXXXXXXXXXXXXXXKTTVXXXXXXXXXXXXXXXXXXXXXXXXXXNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGXXXIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGYLNSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKFKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKXXXXXXXXXXXXXXXXXXXXXXXXXXKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGM","localization":["Host cytoplasm, host perinuclear region","Membrane; Multi-pass membrane protein"],"uniref100":"UniRef100_A0A8B1JFN7","uniref90":"UniRef90_A0A8B1JFN7","uniref50":"UniRef50_A0A8B6RWB8","uniparc":"UPI001BB5082C","processing":{"positions":[[2166,2485],[2170,2183],[2445,2455],[2486,2763],[2486,2580],[2581,2662],[2663,2763]],"names":["Y1","ZF1","ZF2","CoV-Y","Y2","Y3","Y4"]},"prediction-transmembrane-uniprot":{"regions":[[2773,2790],[3078,3101],[3108,3130],[3136,3157],[3582,3605],[3611,3629],[3636,3657],[3683,3701]],"content_count":171,"content_fraction":0.039085714285714286},"homology-domain-gene3d":{"regions":[[1063,1194],[1231,1361],[1367,1424],[1453,1494],[1496,1561],[1563,1620],[1621,1744],[1745,1799],[1906,2007],[3165,3232],[3271,3397],[3278,3362],[3465,3569],[3862,3940],[4049,4138],[4139,4253],[853,919]],"content_fraction":0.324,"content_count":1419,"regions_ids":["3.40.220.10","3.40.220.30","3.40.220.20","3.40.220.20","3.40.30.150","3.10.20.540","1.10.8.1190","2.60.120.1680","3.40.50.11020","1.10.150.420","2.40.10.10","2.40.10.10","1.10.1840.10","1.10.8.370","3.30.70.3540","2.40.10.250","3.10.20.350"],"regions_names":["Macro domain-like","Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirus","Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirus","Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirus","Polyprotein cleavage domain PL2pro superfamily, betacoronavirus","Papain-like protease, N-terminal domain superfamily, coronavirus","Papain-like protease, thumb domain superfamily, coronavirus","Papain-like viral protease, palm and finger domains, coronavirus","Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirus","Non-structural protein NSP4, C-terminal superfamily, coronavirus","Peptidase S1, PA clan, chymotrypsin-like fold","Peptidase S1, PA clan, chymotrypsin-like fold","Peptidase C30, domain 3, coronavirus","Non-structural protein NSP7 superfamily, coronavirus","Non-structural protein NSP8 superfamily, coronavirus","Non-structural protein NSP9 superfamily, coronavirus","Non-structural protein NSP3A domain-like superfamily"]},"homology-domain-pfam":{"regions":[[1067,1164],[1351,1493],[1498,1561],[1564,1792],[1907,2001],[229,423],[2459,2748],[2877,3001],[3073,3141],[3166,3228],[3292,3397],[3468,3582],[3599,3838],[3866,3942],[3943,3997],[4052,4139],[4141,4253],[4262,4375],[880,978]],"content_fraction":0.544,"content_count":2378,"regions_ids":["PF01661","PF11633","PF12124","PF08715","PF16251","PF19211","PF19218","PF19217","PF19217","PF16348","PF05409","PF05409","PF19213","PF08716","PF08717","PF08717","PF08710","PF09401","PF12379"],"regions_names":["Macro domain","Non-structural protein NSP3, SUD-M domain, betacoronavirus","DPUP/SUD, C-terminal, betacoronavirus","Peptidase C16, coronavirus","Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirus","Nonstructural protein 2, N-terminal domain, coronavirus","Coronavirus replicase NSP3, C-terminal","Non-structural protein NSP4, N-terminal, coronavirus","Non-structural protein NSP4, N-terminal, coronavirus","Non-structural protein NSP4, C-terminal, coronavirus","Peptidase C30, coronavirus","Peptidase C30, coronavirus","Non-structural protein 6, coronavirus","Non-structural protein NSP7, coronavirus","Non-structural protein NSP8, coronavirus","Non-structural protein NSP8, coronavirus","Non-structural protein NSP9, coronavirus","RNA synthesis protein NSP10, coronavirus","Non-structural protein NSP3, N-terminal, betacoronavirus"]},"homology-domain-merge":{"regions":[[229,423],[853,978],[1063,1194],[1231,1494],[1496,1561],[1563,1799],[1906,2007],[2459,2748],[2877,3001],[3073,3141],[3165,3232],[3271,3397],[3465,3582],[3599,3838],[3862,3997],[4049,4253],[4262,4375]],"content_fraction":0.597,"content_count":2614},"prediction-disorder-disHL":{"regions":[[1,23],[45,47],[61,65],[107,112],[129,139],[155,169],[212,224],[239,249],[278,281],[283,289],[293,293],[302,310],[350,352],[508,508],[510,527],[554,557],[708,719],[724,736],[745,749],[761,770],[893,897],[941,950],[1178,1180],[1225,1232],[1242,1247],[1290,1293],[1301,1310],[1317,1325],[1328,1337],[1355,1365],[1383,1392],[1401,1412],[1471,1482],[1490,1499],[1511,1516],[1542,1552],[1568,1576],[1610,1623],[1638,1640],[1755,1764],[1871,1888],[1892,1893],[1895,1895],[1897,1897],[1910,1915],[1946,1964],[2104,2110],[2129,2135],[2147,2155],[2187,2199],[2479,2491],[2528,2537],[2600,2606],[2659,2668],[2682,2683],[2733,2751],[2757,2766],[2923,2929],[2960,2960],[2962,2970],[2987,2996],[3290,3295],[3310,3312],[3354,3362],[3367,3372],[3700,3705],[3988,3997],[4056,4059],[4065,4066],[4114,4121],[4159,4166],[4234,4237],[4258,4264],[4356,4367],[4369,4370],[4372,4375]],"content_count":619,"content_fraction":0.141},"prediction-disorder-dis465":{"regions":[[1,6],[130,133],[166,168],[212,212],[247,250],[512,518],[767,768],[934,946],[969,976],[1230,1231],[1757,1758],[2548,2557],[2990,2991],[2993,2994],[4155,4159],[4373,4375]],"content_count":74,"content_fraction":0.017},"prediction-disorder-espN":{"regions":[[1,11],[111,112],[123,155],[165,167],[208,212],[245,248],[297,297],[933,933],[945,958],[966,979],[1019,1023],[1080,1087],[1122,1124],[1228,1228],[1488,1495],[1588,1602],[1609,1614],[1867,1875],[1916,1924],[1949,1950],[2067,2067],[2081,2082],[2482,2483],[2533,2533],[3270,3277],[3516,3516],[4317,4323]],"content_count":176,"content_fraction":0.04},"prediction-disorder-espX":{"regions":[[1,5],[74,91],[130,134],[176,211],[766,771],[910,1076],[1207,1210],[1214,1214],[1792,1795],[2001,2007],[2190,2475],[2608,2646],[2790,2885],[3989,4012]],"content_count":698,"content_fraction":0.16},"prediction-disorder-glo":{"regions":[[2,2],[5,6],[8,8],[70,76],[126,161],[269,272],[326,330],[364,365],[393,393],[431,444],[784,846],[848,848],[926,927],[949,959],[1058,1074],[1092,1104],[1263,1267],[1324,1334],[1441,1449],[1487,1489],[1491,1493],[1514,1516],[1536,1541],[1592,1610],[1614,1618],[1787,1799],[1801,1859],[1862,1862],[1911,1926],[2208,2210],[2275,2447],[2480,2485],[2529,2532],[2617,2636],[2666,2666],[2805,2879],[2926,2934],[3008,3062],[3225,3227],[3236,3274],[3378,3391],[3399,3404],[3407,3458],[3826,3836],[4006,4042],[4045,4056],[4079,4085],[4202,4206],[4287,4288],[4317,4320],[4331,4345],[4354,4362],[4366,4367],[4370,4370],[4373,4373]],"content_count":899,"content_fraction":0.205},"prediction-disorder-iupl":{"regions":[[2,2],[64,96],[98,99],[102,102],[154,158],[160,161],[168,170],[172,203],[207,207],[355,394],[612,612],[769,848],[850,850],[917,1063],[1065,1066],[1069,1071],[1201,1223],[1417,1454],[1456,1457],[1488,1489],[1605,1606],[1798,1870],[2002,2063],[2193,2194],[2201,2447],[2609,2642],[2801,2801],[2804,2870],[3008,3065],[3231,3268],[3402,3459],[3848,3858],[3997,4049],[4204,4219]],"content_count":1141,"content_fraction":0.261},"prediction-disorder-iups":{"regions":[[1,6],[67,67],[72,73],[75,77],[151,151],[156,161],[163,163],[763,764],[768,779],[925,987],[1863,1863],[1918,1918],[2005,2006],[2259,2282],[3264,3266],[4045,4046],[4207,4207]],"content_count":131,"content_fraction":0.03},"prediction-low_complexity-seg":{"regions":[[67,106],[174,207],[355,374],[384,403],[601,618],[742,760],[774,857],[916,933],[972,1070],[1194,1226],[1237,1255],[1412,1427],[1431,1458],[1791,1870],[2001,2070],[2172,2183],[2201,2267],[2270,2461],[2546,2558],[2607,2645],[2797,2877],[3000,3073],[3226,3245],[3253,3272],[3397,3469],[3583,3599],[3839,3858],[3869,3885],[3912,3920],[3973,3989],[3995,4053],[4197,4230]],"content_count":1362,"content_fraction":0.311},"prediction-lip-anchor":{"regions":[[115,122],[900,910],[936,971],[1351,1355],[2172,2177],[2266,2275]],"content_count":76,"content_fraction":0.017},"prediction-disorder-th_50":{"regions":[[1,6],[75,76],[130,134],[155,158],[160,161],[768,770],[926,927],[933,959],[966,979],[2275,2282]],"content_count":73,"content_fraction":0.017}}